Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006863.1 Corchorus olitorius cultivar O-4 contig06888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 746

Length: 1244
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29


Found at i:423 original size:49 final size:49

Alignment explanation


    Indices: 346--486  Score: 173
    Period size: 49  Copynumber: 2.9  Consensus size: 49

        336 GAGCGTGCCA

                         *         *                         
        346 ATCAATTTTGTCAAAAAAATTGATAAAAAGTGCAATAAAAAGTTAAAAG
          1 ATCAATTTTGTCATAAAAATTGAGAAAAAGTGCAATAAAAAGTTAAAAG

                        *                                       
        395 ATCAATTTTGTCTTAAAAATTGAGAAAAAGGGTGCAAGT-AAAA--TAAAAG
          1 ATCAATTTTGTCATAAAAATTGAGAAAAA--GTGCAA-TAAAAAGTTAAAAG

            *                                  *        
        444 TTCAATTTTGT-AGTAAAAATTGAGAAAAAGTGCAGTAAAAAGT
          1 ATCAATTTTGTCA-TAAAAATTGAGAAAAAGTGCAATAAAAAGT

        487 AAAGGATTGC


Statistics
Matches: 79,  Mismatches: 6, Indels: 14
        0.80            0.06        0.14

Matches are distributed among these distances:
  46    1  0.01
  47    9  0.11
  49   58  0.73
  51   10  0.13
  52    1  0.01

ACGTcount: A:0.50, C:0.06, G:0.16, T:0.28


Consensus pattern (49 bp):   
ATCAATTTTGTCATAAAAATTGAGAAAAAGTGCAATAAAAAGTTAAAAG
Done.