Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006864.1 Corchorus olitorius cultivar O-4 contig06889, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35


Found at i:657 original size:15 final size:15

Alignment explanation


    Indices: 632--671  Score: 53
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        622 CAGCAGGCCC

                  *        
        632 CTTTTTCTCTTTCTT
          1 CTTTTTTTCTTTCTT

            *              
        647 TTTTTTTTCTTTCTT
          1 CTTTTTTTCTTTCTT

                *     
        662 CTTTCTTTCT
          1 CTTTTTTTCT

        672 CCTCCCTCCT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78


Consensus pattern (15 bp):   
CTTTTTTTCTTTCTT
Done.