Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006866.1 Corchorus olitorius cultivar O-4 contig06891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2181
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30


Found at i:534 original size:17 final size:16

Alignment explanation


    Indices: 512--551  Score: 55
    Period size: 15  Copynumber: 2.4  Consensus size: 16

        502 TCTTGTCTAC

                             
        512 TCTCTTTAAGACTCTTG
          1 TCTCTTT-AGACTCTTG

                            
        529 TCTC-TTAGACTCTTG
          1 TCTCTTTAGACTCTTG

                    
        544 TCTACTTT
          1 TCT-CTTT

        552 TTTTTTTCTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  15   12  0.57
  16    3  0.14
  17    6  0.29

ACGTcount: A:0.15, C:0.25, G:0.10, T:0.50


Consensus pattern (16 bp):   
TCTCTTTAGACTCTTG
Done.