Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006872.1 Corchorus olitorius cultivar O-4 contig06897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1203
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37


Found at i:258 original size:36 final size:36

Alignment explanation


    Indices: 218--286  Score: 86
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        208 CATTAGAGGA

                   *                             
        218 ATTGAATTCAATCCATATG-GTGTGCGATACAAGTTC
          1 ATTGAATCCAATCCATATGTG-GTGCGATACAAGTTC

                     **               *      
        254 ATTGAATCCTTTCCATATGTGGTGCGCTACAAG
          1 ATTGAATCCAATCCATATGTGGTGCGATACAAG

        287 AAAGGTAAGG


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  36   27  0.96
  37    1  0.04

ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Consensus pattern (36 bp):   
ATTGAATCCAATCCATATGTGGTGCGATACAAGTTC
Done.