Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006877.1 Corchorus olitorius cultivar O-4 contig06902, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 812

Length: 1354
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29


Found at i:728 original size:37 final size:37

Alignment explanation


    Indices: 678--751  Score: 148
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        668 TCTCTACGAT

                                                 
        678 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC
          1 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC

                                                 
        715 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC
          1 CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC

        752 TCAGACACAG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.16, C:0.35, G:0.16, T:0.32


Consensus pattern (37 bp):   
CCTCTCCTCTCCCTACGGTCGAGTGTATTAGTTAACC
Done.