Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000688.1 Corchorus olitorius cultivar O-4 contig00688, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41


Found at i:462 original size:15 final size:16

Alignment explanation


    Indices: 444--480  Score: 53
    Period size: 16  Copynumber: 2.5  Consensus size: 16

        434 TTTTTCTCTC

                            
        444 TTTTTTTT-T-GTA-T
          1 TTTTTTTTGTAGTAGT

                            
        457 TTTTTTTTGTAGTAGT
          1 TTTTTTTTGTAGTAGT

                    
        473 TTTTTTTT
          1 TTTTTTTT

        481 CTACTAAATG


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  13    8  0.38
  14    1  0.05
  15    3  0.14
  16    9  0.43

ACGTcount: A:0.08, C:0.00, G:0.11, T:0.81


Consensus pattern (16 bp):   
TTTTTTTTGTAGTAGT
Done.