Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006880.1 Corchorus olitorius cultivar O-4 contig06905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 665

Length: 1109
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50


Found at i:483 original size:4 final size:4

Alignment explanation


    Indices: 476--540  Score: 130
    Period size: 4  Copynumber: 16.2  Consensus size: 4

        466 TATATATATA

                                                                       
        476 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
          1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT

                                 
        524 TATT TATT TATT TATT T
          1 TATT TATT TATT TATT T

        541 TGATAGATAG


Statistics
Matches: 61,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   61  1.00

ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75


Consensus pattern (4 bp):   
TATT

Done.