Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006883.1 Corchorus olitorius cultivar O-4 contig06908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4077
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30


Found at i:4044 original size:34 final size:34

Alignment explanation


    Indices: 3947--4077  Score: 115
    Period size: 35  Copynumber: 3.6  Consensus size: 34

       3937 AAAATGCTTT

                     *       *                     
       3947 TGATGGGAATTTTCCCACTTTGAAAACTGAAACCGAAAC
          1 TGATGGGAACTTTCCCAATTTGAAAACT-----CGAAAC

               *                                 
       3986 TGACGGGAACTTTCCCTGAA-TTGAAAA-TCGAAACC
          1 TGATGGGAACTTTCCC--AATTTGAAAACTCGAAA-C

                                         *     
       4021 TGATGGGAACTTTCCCAATTTGAAAACTTTG-AAC
          1 TGATGGGAACTTTCCCAATTTGAAAAC-TCGAAAC

                                   
       4055 TGGATGGGAACTTTCCCAATTTG
          1 T-GATGGGAACTTTCCCAATTTG


Statistics
Matches: 80,  Mismatches: 5, Indels: 18
        0.78            0.05        0.17

Matches are distributed among these distances:
  33    2  0.03
  34   14  0.17
  35   39  0.49
  36    2  0.03
  39   15  0.19
  40    7  0.09
  41    1  0.01

ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Consensus pattern (34 bp):   
TGATGGGAACTTTCCCAATTTGAAAACTCGAAAC
Done.