Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000689.1 Corchorus olitorius cultivar O-4 contig00689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1126
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.25

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:52 original size:1 final size:1

Alignment explanation


    Indices: 1--37  Score: 65
    Period size: 1  Copynumber: 37.0  Consensus size: 1

                       *                         
          1 AAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

         38 CTACAGCCTA


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   1   34  1.00

ACGTcount: A:0.97, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:323 original size:27 final size:27

Alignment explanation


    Indices: 285--346  Score: 106
    Period size: 27  Copynumber: 2.3  Consensus size: 27

        275 AAGGTCAAAA

                                  *    
        285 GGGTAAGGATCTGGTCCAGACTTAGTT
          1 GGGTAAGGATCTGGTCCAGACTGAGTT

                 *                     
        312 GGGTATGGATCTGGTCCAGACTGAGTT
          1 GGGTAAGGATCTGGTCCAGACTGAGTT

                    
        339 GGGTAAGG
          1 GGGTAAGG

        347 CAGCGTCAAA


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  27   32  1.00

ACGTcount: A:0.21, C:0.13, G:0.39, T:0.27


Consensus pattern (27 bp):   
GGGTAAGGATCTGGTCCAGACTGAGTT
Done.