Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000069.1 Corchorus olitorius cultivar O-4 contig00069, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4469
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:647 original size:17 final size:18

Alignment explanation


    Indices: 622--664  Score: 61
    Period size: 17  Copynumber: 2.4  Consensus size: 18

        612 ACTATAATCT

                     *         
        622 TTTCTTTCGTTTCTTCTTC
          1 TTTC-TTCGCTTCTTCTTC

                              
        641 -TTCTTCGCTTCTTCTTC
          1 TTTCTTCGCTTCTTCTTC

                   
        658 TTTCTTC
          1 TTTCTTC

        665 CCGTTGATTG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  17   13  0.59
  18    9  0.41

ACGTcount: A:0.00, C:0.30, G:0.05, T:0.65


Consensus pattern (18 bp):   
TTTCTTCGCTTCTTCTTC
Done.