Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006905.1 Corchorus olitorius cultivar O-4 contig06930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:1437 original size:19 final size:19

Alignment explanation


    Indices: 1413--1455  Score: 59
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1403 AAAAACAACA

                               
       1413 TATTTGGGCTTCTATTTAT
          1 TATTTGGGCTTCTATTTAT

                    *  *       
       1432 TATTTGGGTTTTTATTTAT
          1 TATTTGGGCTTCTATTTAT

            *    
       1451 GATTT
          1 TATTT

       1456 AAGTCTTATT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.16, C:0.05, G:0.16, T:0.63


Consensus pattern (19 bp):   
TATTTGGGCTTCTATTTAT
Done.