Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000691.1 Corchorus olitorius cultivar O-4 contig00691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1128
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29


Found at i:157 original size:22 final size:22

Alignment explanation


    Indices: 132--179  Score: 53
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        122 GATTTCAAGT

                *        *         
        132 GAAGGAATTAATCGACT-AAGAG
          1 GAAGAAATT-ATCAACTCAAGAG

                     *            
        154 GAAGAAATTTTCAACTCAAGAG
          1 GAAGAAATTATCAACTCAAGAG

                
        176 GAAG
          1 GAAG

        180 CAAACCGTCG


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  21    5  0.23
  22   17  0.77

ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19


Consensus pattern (22 bp):   
GAAGAAATTATCAACTCAAGAG
Done.