Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006910.1 Corchorus olitorius cultivar O-4 contig06935, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1542
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35


Found at i:1504 original size:33 final size:32

Alignment explanation


    Indices: 1396--1542  Score: 127
    Period size: 33  Copynumber: 4.5  Consensus size: 32

       1386 AAGAGTAATT

                           *         *     * 
       1396 CTAAATCTGTTTTAGATGTTGTTTGCGATGATA
          1 CTAAATCTGTTTT-GGTGTTGTTTGTGATGAAA

                 *  **            *        * 
       1429 CTAAACCTAATTTGAGTGTTGTATGTGATGACA
          1 CTAAATCTGTTTTG-GTGTTGTTTGTGATGAAA

                                             
       1462 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA
          1 CTAAATCTGTTTT-GGTGTTGTTTGTGATGAAA

                               * **            
       1495 C-AAATTCTGTTTTGGATGCTAATTGTGATGAAAA
          1 CTAAA-TCTGTTTTGG-TGTTGTTTGTGATG-AAA

                           
       1529 C-AAATCTGTTTTGG
          1 CTAAATCTGTTTTGG


Statistics
Matches: 94,  Mismatches: 15, Indels: 10
        0.79            0.13        0.08

Matches are distributed among these distances:
  32    6  0.06
  33   80  0.85
  34    8  0.09

ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41


Consensus pattern (32 bp):   
CTAAATCTGTTTTGGTGTTGTTTGTGATGAAA
Done.