Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006912.1 Corchorus olitorius cultivar O-4 contig06937, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29


Found at i:1012 original size:2 final size:2

Alignment explanation


    Indices: 1007--1094  Score: 101
    Period size: 2  Copynumber: 43.5  Consensus size: 2

        997 AAAAAAATAA

                      *                              *                      
       1007 AT AT AT AG AT A- AT AT AT AGT AT A- AGT GT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT

                                                                            
       1049 AGT AT A- AGT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                
       1092 AT A
          1 AT A

       1095 A


Statistics
Matches: 75,  Mismatches: 4, Indels: 14
        0.81            0.04        0.15

Matches are distributed among these distances:
   1    3  0.04
   2   67  0.89
   3    5  0.07

ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44


Consensus pattern (2 bp):   
AT

Done.