Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006919.1 Corchorus olitorius cultivar O-4 contig06944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1332
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37


Found at i:723 original size:20 final size:20

Alignment explanation


    Indices: 679--724  Score: 58
    Period size: 20  Copynumber: 2.3  Consensus size: 20

        669 TCAAGGAAAC

                         *      
        679 AACCCGTTGAAACTCGGTGT
          1 AACCCGTTGAAACCCGGTGT

            *                    
        699 GACCCGTTGAAACCCGGAT-T
          1 AACCCGTTGAAACCCGG-TGT

                  
        719 AACCCG
          1 AACCCG

        725 GTGACCCGGC


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  20   21  0.95
  21    1  0.05

ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20


Consensus pattern (20 bp):   
AACCCGTTGAAACCCGGTGT
Done.