Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006928.1 Corchorus olitorius cultivar O-4 contig06953, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27


Found at i:911 original size:21 final size:21

Alignment explanation


    Indices: 887--978  Score: 141
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        877 CTTAGGCAAT

                         *       
        887 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                 
        908 TCCAATGAGCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

            *                    
        929 CCCAATGAGCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                      *           
        950 TCCAATGAGCATGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        971 TCCAATGA
          1 TCCAATGA

        979 TCTCCTAGCA


Statistics
Matches: 66,  Mismatches: 4, Indels: 2
        0.92            0.06        0.03

Matches are distributed among these distances:
  20    3  0.05
  21   63  0.95

ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.