Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006929.1 Corchorus olitorius cultivar O-4 contig06954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22


Found at i:1259 original size:13 final size:13

Alignment explanation


    Indices: 1226--1270  Score: 58
    Period size: 12  Copynumber: 3.6  Consensus size: 13

       1216 GCACCCAAAA

                        *
       1226 CATTTAT-TAAAA
          1 CATTTATATAAAG

                         
       1238 CATTT-TATAAAG
          1 CATTTATATAAAG

                         
       1250 CATTTATATAAAG
          1 CATTTATATAAAG

              *     
       1263 CAGTTATA
          1 CATTTATA

       1271 AAACAGTTCC


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  11    1  0.03
  12   14  0.48
  13   14  0.48

ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40


Consensus pattern (13 bp):   
CATTTATATAAAG

Found at i:1278 original size:11 final size:11

Alignment explanation


    Indices: 1222--1275  Score: 54
    Period size: 12  Copynumber: 4.5  Consensus size: 11

       1212 TTATGCACCC

                        
       1222 AAAACATTTATT
          1 AAAACATTTA-T

                        
       1234 AAAACATTTTAT
          1 AAAACA-TTTAT

               *       
       1246 AAAGCATTTAT
          1 AAAACATTTAT

                    *    
       1257 ATAAAGCAGTTAT
          1 A-AAA-CATTTAT

                  
       1270 AAAACA
          1 AAAACA

       1276 GTTCCTCAAC


Statistics
Matches: 36,  Mismatches: 3, Indels: 7
        0.78            0.07        0.15

Matches are distributed among these distances:
  11    8  0.22
  12   17  0.47
  13   11  0.31

ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33


Consensus pattern (11 bp):   
AAAACATTTAT
Done.