Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006930.1 Corchorus olitorius cultivar O-4 contig06955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1985
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34


Found at i:1368 original size:34 final size:34

Alignment explanation


    Indices: 1325--1392  Score: 127
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       1315 AGATGCTTTT

                                              
       1325 GGATAGTACTGGAAAGTGGATATCTATATACTCA
          1 GGATAGTACTGGAAAGTGGATATCTATATACTCA

                                         *    
       1359 GGATAGTACTGGAAAGTGGATATCTATATTCTCA
          1 GGATAGTACTGGAAAGTGGATATCTATATACTCA

       1393 CTCGAAGACA


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   33  1.00

ACGTcount: A:0.34, C:0.12, G:0.24, T:0.31


Consensus pattern (34 bp):   
GGATAGTACTGGAAAGTGGATATCTATATACTCA
Done.