Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006932.1 Corchorus olitorius cultivar O-4 contig06957, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37


Found at i:754 original size:6 final size:6

Alignment explanation


    Indices: 725--775  Score: 70
    Period size: 6  Copynumber: 8.5  Consensus size: 6

        715 GTTTAGACTT

                                                                     
        725 ATATAG TATATAG AT-T-G TATATAG ATATAG ATATAG ATATAG ATATAG
          1 ATATAG -ATATAG ATATAG -ATATAG ATATAG ATATAG ATATAG ATATAG

               
        773 ATA
          1 ATA

        776 CTAATAAAAG


Statistics
Matches: 41,  Mismatches: 0, Indels: 7
        0.85            0.00        0.15

Matches are distributed among these distances:
   4    1  0.02
   5    3  0.07
   6   30  0.73
   7    7  0.17

ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37


Consensus pattern (6 bp):   
ATATAG

Done.