Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006935.1 Corchorus olitorius cultivar O-4 contig06960, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1502
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36


Found at i:979 original size:22 final size:21

Alignment explanation


    Indices: 922--980  Score: 57
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        912 AGTTTGGTAT

                                 *
        922 AATTAAAA-ACTTAATTTATGG
          1 AATTAAAATAC-TAATTTATGA

                  *   *         * 
        943 AATTAATATATTAATTTATCTA
          1 AATTAAAATACTAATTTAT-GA

                            
        965 AATTAAAATACTAATT
          1 AATTAAAATACTAATT

        981 AATTCAATTG


Statistics
Matches: 30,  Mismatches: 6, Indels: 3
        0.77            0.15        0.08

Matches are distributed among these distances:
  21   15  0.50
  22   15  0.50

ACGTcount: A:0.49, C:0.05, G:0.03, T:0.42


Consensus pattern (21 bp):   
AATTAAAATACTAATTTATGA

Found at i:1178 original size:21 final size:21

Alignment explanation


    Indices: 1154--1197  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1144 TAATTATAAC

                                 
       1154 TTCACTTATCAAATCAATATA
          1 TTCACTTATCAAATCAATATA

                     *    *   *  
       1175 TTCACTTATGAAATTAATTTA
          1 TTCACTTATCAAATCAATATA

              
       1196 TT
          1 TT

       1198 AATTTATCTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45


Consensus pattern (21 bp):   
TTCACTTATCAAATCAATATA
Done.