Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006943.1 Corchorus olitorius cultivar O-4 contig06968, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 770

Length: 1284
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25


Found at i:405 original size:12 final size:12

Alignment explanation


    Indices: 384--414  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        374 GGTAAGACTT

                 *      
        384 AGAGAGAGGGGA
          1 AGAGAAAGGGGA

                        
        396 AGAGAAAGGGGA
          1 AGAGAAAGGGGA

                   
        408 AGAGAAA
          1 AGAGAAA

        415 AGGAAAAAGT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (12 bp):   
AGAGAAAGGGGA
Done.