Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006948.1 Corchorus olitorius cultivar O-4 contig06973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:781 original size:10 final size:10

Alignment explanation


    Indices: 768--801  Score: 59
    Period size: 10  Copynumber: 3.4  Consensus size: 10

        758 ATATCTCGAT

                      
        768 ATATCCGTAA
          1 ATATCCGTAA

                  *   
        778 ATATCCATAA
          1 ATATCCGTAA

                      
        788 ATATCCGTAA
          1 ATATCCGTAA

                
        798 ATAT
          1 ATAT

        802 TCATTTTAAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  10   22  1.00

ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32


Consensus pattern (10 bp):   
ATATCCGTAA
Done.