Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006971.1 Corchorus olitorius cultivar O-4 contig06996, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1052
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:349 original size:22 final size:22

Alignment explanation


    Indices: 321--362  Score: 84
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        311 ACTGAATATT

                                  
        321 TCCAAATCAAAATCAATTTTTA
          1 TCCAAATCAAAATCAATTTTTA

                                
        343 TCCAAATCAAAATCAATTTT
          1 TCCAAATCAAAATCAATTTT

        363 CATTAATGAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36


Consensus pattern (22 bp):   
TCCAAATCAAAATCAATTTTTA
Done.