Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006976.1 Corchorus olitorius cultivar O-4 contig07001, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30


Found at i:535 original size:12 final size:11

Alignment explanation


    Indices: 507--535  Score: 58
    Period size: 11  Copynumber: 2.6  Consensus size: 11

        497 AAAATTTTTT

                       
        507 TATTTTTGAAA
          1 TATTTTTGAAA

                       
        518 TATTTTTGAAA
          1 TATTTTTGAAA

                   
        529 TATTTTT
          1 TATTTTT

        536 CAATTAAACT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62


Consensus pattern (11 bp):   
TATTTTTGAAA

Found at i:687 original size:25 final size:24

Alignment explanation


    Indices: 648--694  Score: 60
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        638 CTTGAAAATT

                  *                   
        648 TGAAAATCTTTGATGGATGAGATGGA
          1 TGAAAAACTTTGAT-GAT-AGATGGA

                                  
        674 TGAAAAAC-TTGATGATAGATG
          1 TGAAAAACTTTGATGATAGATG

        695 AATAGAAGGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  23    5  0.25
  24    3  0.15
  25    5  0.25
  26    7  0.35

ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30


Consensus pattern (24 bp):   
TGAAAAACTTTGATGATAGATGGA
Done.