Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006986.1 Corchorus olitorius cultivar O-4 contig07011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 722

Length: 1204
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.33


Found at i:461 original size:19 final size:19

Alignment explanation


    Indices: 434--470  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        424 CGGTGGAGAA

                               
        434 AACAAAAATGAAGAAAATT
          1 AACAAAAATGAAGAAAATT

                *             
        453 AACACAAATGAAGAAAAT
          1 AACAAAAATGAAGAAAAT

        471 GAAGTAACGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.68, C:0.08, G:0.11, T:0.14


Consensus pattern (19 bp):   
AACAAAAATGAAGAAAATT
Done.