Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006994.1 Corchorus olitorius cultivar O-4 contig07019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1127
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.40


Found at i:507 original size:35 final size:35

Alignment explanation


    Indices: 461--551  Score: 182
    Period size: 35  Copynumber: 2.6  Consensus size: 35

        451 TAAATTAGAT

                                               
        461 CTTTTGTATGTTTATTTATTTATTTTCTTGGCCGA
          1 CTTTTGTATGTTTATTTATTTATTTTCTTGGCCGA

                                               
        496 CTTTTGTATGTTTATTTATTTATTTTCTTGGCCGA
          1 CTTTTGTATGTTTATTTATTTATTTTCTTGGCCGA

                                 
        531 CTTTTGTATGTTTATTTATTT
          1 CTTTTGTATGTTTATTTATTT

        552 GGGGTGAGTG


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   56  1.00

ACGTcount: A:0.14, C:0.10, G:0.13, T:0.63


Consensus pattern (35 bp):   
CTTTTGTATGTTTATTTATTTATTTTCTTGGCCGA

Done.