Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006999.1 Corchorus olitorius cultivar O-4 contig07024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 818

Length: 1364
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37


Found at i:427 original size:36 final size:36

Alignment explanation


    Indices: 380--449  Score: 106
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        370 TTCAATAACC

                                 *               
        380 TTACATCTTTTG-AGATTTTGGTTATCATATTTCTTA
          1 TTACATCTTTTGTA-ATTTTGATTATCATATTTCTTA

                  *                           
        416 TTACATTTTTTGTAATTTTGATTATCATATTTCT
          1 TTACATCTTTTGTAATTTTGATTATCATATTTCT

        450 CCAAAATCTC


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  36   30  0.97
  37    1  0.03

ACGTcount: A:0.23, C:0.10, G:0.09, T:0.59


Consensus pattern (36 bp):   
TTACATCTTTTGTAATTTTGATTATCATATTTCTTA
Done.