Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007000.1 Corchorus olitorius cultivar O-4 contig07025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.39


Found at i:1011 original size:101 final size:105

Alignment explanation


    Indices: 896--1104  Score: 390
    Period size: 101  Copynumber: 2.0  Consensus size: 105

        886 ATACACCAAA

                                                                             
        896 AAAGTAAATATTTCTCATTTCCACCATATTTTCCAATTTCATTTTGCTTTCATTTTC-TTT-TAT
          1 AAAGTAAATATTTCTCATTTCCACCATATTTTCCAATTTCATTTTGCTTTCATTTTCTTTTATAT

                                                    
        959 -ATA-ATATATATATATATATATCTTTTAGATTTAAATTC
         66 AATATATATATATATATATATATCTTTTAGATTTAAATTC

                                                                             
        997 AAAGTAAATATTTCTCATTTCCACCATATTTTCCAATTTCATTTTGCTTTCATTTTCTTTTATAT
          1 AAAGTAAATATTTCTCATTTCCACCATATTTTCCAATTTCATTTTGCTTTCATTTTCTTTTATAT

                                                    
       1062 AATATATATATATATATATATATCTTTTAGATTTAAATTC
         66 AATATATATATATATATATATATCTTTTAGATTTAAATTC

               
       1102 AAA
          1 AAA

       1105 TATGAGAAAG


Statistics
Matches: 104,  Mismatches: 0, Indels: 4
        0.96            0.00        0.04

Matches are distributed among these distances:
 101   57  0.55
 102    3  0.03
 103    3  0.03
 104    3  0.03
 105   38  0.37

ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51


Consensus pattern (105 bp):   
AAAGTAAATATTTCTCATTTCCACCATATTTTCCAATTTCATTTTGCTTTCATTTTCTTTTATAT
AATATATATATATATATATATATCTTTTAGATTTAAATTC
Done.