Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007002.1 Corchorus olitorius cultivar O-4 contig07027, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37


Found at i:208 original size:4 final size:4

Alignment explanation


    Indices: 194--224  Score: 55
    Period size: 4  Copynumber: 8.0  Consensus size: 4

        184 TTCTAGCTAT

                                                   
        194 AGAA A-AA AGAA AGAA AGAA AGAA AGAA AGAA
          1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA

        225 TTCCTTATAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   3    3  0.12
   4   23  0.88

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (4 bp):   
AGAA

Done.