Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007003.1 Corchorus olitorius cultivar O-4 contig07028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1718
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1074 original size:27 final size:27

Alignment explanation


    Indices: 1038--1098  Score: 95
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       1028 GGATTTTGGG

                         *             
       1038 GTCATTTGCATGTTCAGGGGCATTTTA
          1 GTCATTTGCATGTCCAGGGGCATTTTA

                            *         *
       1065 GTCATTTGCATGTCCATGGGCATTTTG
          1 GTCATTTGCATGTCCAGGGGCATTTTA

                   
       1092 GTCATTT
          1 GTCATTT

       1099 ACTAGTTCAT


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  27   31  1.00

ACGTcount: A:0.16, C:0.16, G:0.25, T:0.43


Consensus pattern (27 bp):   
GTCATTTGCATGTCCAGGGGCATTTTA
Done.