Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007010.1 Corchorus olitorius cultivar O-4 contig07035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1352
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25


Found at i:655 original size:16 final size:16

Alignment explanation


    Indices: 630--670  Score: 73
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        620 AGAGATTGAC

                 *          
        630 AGAAAGCAATTAAACT
          1 AGAAAACAATTAAACT

                            
        646 AGAAAACAATTAAACT
          1 AGAAAACAATTAAACT

                     
        662 AGAAAACAA
          1 AGAAAACAA

        671 AGCAGAGTAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  16   24  1.00

ACGTcount: A:0.63, C:0.12, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT
Done.