Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007012.1 Corchorus olitorius cultivar O-4 contig07037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:832 original size:20 final size:20

Alignment explanation


    Indices: 807--849  Score: 86
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        797 TCGGCCAAAT

                                
        807 AAGCCCCTGAACTCTTAAAA
          1 AAGCCCCTGAACTCTTAAAA

                                
        827 AAGCCCCTGAACTCTTAAAA
          1 AAGCCCCTGAACTCTTAAAA

               
        847 AAG
          1 AAG

        850 GCCAAATAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   23  1.00

ACGTcount: A:0.42, C:0.28, G:0.12, T:0.19


Consensus pattern (20 bp):   
AAGCCCCTGAACTCTTAAAA
Done.