Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007014.1 Corchorus olitorius cultivar O-4 contig07039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32


Found at i:710 original size:18 final size:18

Alignment explanation


    Indices: 669--714  Score: 56
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        659 CACTAGGAAT

                    *         
        669 TTAATAATAATTATTCAA
          1 TTAATAATTATTATTCAA

            **             *  
        687 AAAATAATTATTATTTAA
          1 TTAATAATTATTATTCAA

                      
        705 TTAATAATTA
          1 TTAATAATTA

        715 ATTAATTTCA


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46


Consensus pattern (18 bp):   
TTAATAATTATTATTCAA
Done.