Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007019.1 Corchorus olitorius cultivar O-4 contig07044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1358
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:539 original size:45 final size:46

Alignment explanation


    Indices: 459--550  Score: 141
    Period size: 45  Copynumber: 2.0  Consensus size: 46

        449 TTTTGTAGAA

                             *       *                    
        459 TAATCAAGTAGAGATATGGGGGGATGGGATTTATTATAACATTTAT
          1 TAATCAAGTAGAGATATAGGGGGATAGGATTTATTATAACATTTAT

                *                     *                   
        505 TAATTAAGTAGAGATA-AGGGGGATATGATTTATTATAACATTTAT
          1 TAATCAAGTAGAGATATAGGGGGATAGGATTTATTATAACATTTAT

             
        550 T
          1 T

        551 GTGTGAAAGG


Statistics
Matches: 42,  Mismatches: 4, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  45   27  0.64
  46   15  0.36

ACGTcount: A:0.37, C:0.03, G:0.23, T:0.37


Consensus pattern (46 bp):   
TAATCAAGTAGAGATATAGGGGGATAGGATTTATTATAACATTTAT
Done.