Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007023.1 Corchorus olitorius cultivar O-4 contig07048, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 677

Length: 1129
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32


Found at i:427 original size:5 final size:5

Alignment explanation


    Indices: 417--442  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

        407 GTATATGAGC

                                           
        417 TGGTG TGGTG TGGTG TGGTG TGGTG T
          1 TGGTG TGGTG TGGTG TGGTG TGGTG T

        443 AGCAAGTACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42


Consensus pattern (5 bp):   
TGGTG

Done.