Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007027.1 Corchorus olitorius cultivar O-4 contig07052, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 667

Length: 1113
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37


Found at i:577 original size:24 final size:23

Alignment explanation


    Indices: 545--601  Score: 62
    Period size: 24  Copynumber: 2.3  Consensus size: 23

        535 TTAAAATTTT

                                      
        545 TCATATTATATT-ATAAATTAATATG
          1 TCAT-TTATATTCATAAA--AATATG

                    *               
        570 TCATTTATTTTCGATAAAAATATG
          1 TCATTTATATTC-ATAAAAATATG

                    
        594 TCATTTAT
          1 TCATTTAT

        602 TATATTTATT


Statistics
Matches: 29,  Mismatches: 1, Indels: 5
        0.83            0.03        0.14

Matches are distributed among these distances:
  24   20  0.69
  25    4  0.14
  26    5  0.17

ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49


Consensus pattern (23 bp):   
TCATTTATATTCATAAAAATATG

Done.