Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007031.1 Corchorus olitorius cultivar O-4 contig07056, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29


Found at i:1015 original size:19 final size:18

Alignment explanation


    Indices: 970--1041  Score: 58
    Period size: 19  Copynumber: 3.8  Consensus size: 18

        960 ACATCAGGTG

                             * 
        970 GTATTA-TTATTTATTAGT
          1 GTATTATTTA-TTATTAAT

                *               
        988 CGTAATATTTATTATTAATT
          1 -GTATTATTTATTATTAA-T

            *                  
       1008 TTATTA-TTATTTATTAAT
          1 GTATTATTTA-TTATTAAT

                            
       1026 GTATTCATTTATTATT
          1 GTATT-ATTTATTATT

       1042 TTCGTAGGTG


Statistics
Matches: 43,  Mismatches: 5, Indels: 10
        0.74            0.09        0.17

Matches are distributed among these distances:
  18    8  0.19
  19   28  0.65
  20    7  0.16

ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61


Consensus pattern (18 bp):   
GTATTATTTATTATTAAT
Done.