Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007049.1 Corchorus olitorius cultivar O-4 contig07074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42


Found at i:994 original size:15 final size:16

Alignment explanation


    Indices: 969--998  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        959 AATAATTATT

                            
        969 TTTAGATTATAATATA
          1 TTTAGATTATAATATA

                           
        985 TTTA-ATTATAATAT
          1 TTTAGATTATAATAT

        999 TATTATTTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15   10  0.71
  16    4  0.29

ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53


Consensus pattern (16 bp):   
TTTAGATTATAATATA

Done.