Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000705.1 Corchorus olitorius cultivar O-4 contig00705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1053
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:501 original size:9 final size:9

Alignment explanation


    Indices: 483--520  Score: 51
    Period size: 9  Copynumber: 4.3  Consensus size: 9

        473 TTAATTCATT

                     
        483 TAATTT-CA
          1 TAATTTCCA

                     
        491 TAATTTCCA
          1 TAATTTCCA

                    *
        500 TAATTTCCT
          1 TAATTTCCA

                   * 
        509 TAATTTCTA
          1 TAATTTCCA

               
        518 TAA
          1 TAA

        521 GTAATTTGGG


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
   8    6  0.23
   9   20  0.77

ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50


Consensus pattern (9 bp):   
TAATTTCCA
Done.