Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007050.1 Corchorus olitorius cultivar O-4 contig07075, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1321
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29


Found at i:607 original size:17 final size:17

Alignment explanation


    Indices: 585--626  Score: 59
    Period size: 17  Copynumber: 2.5  Consensus size: 17

        575 GATCACCCCC

                   *          
        585 AGATCACTAGTGAT-CTA
          1 AGATCACCAGTGATGC-A

                             
        602 AGATCACCAGTGATGCA
          1 AGATCACCAGTGATGCA

                    
        619 AGATCACC
          1 AGATCACC

        627 GGTGGTCAAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17   22  0.96
  18    1  0.04

ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21


Consensus pattern (17 bp):   
AGATCACCAGTGATGCA
Done.