Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007054.1 Corchorus olitorius cultivar O-4 contig07079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1512
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28


Found at i:291 original size:18 final size:19

Alignment explanation


    Indices: 258--293  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

        248 TGAAGATTTA

                               
        258 TTGAAGACAAATTGAAGAT
          1 TTGAAGACAAATTGAAGAT

                     *        
        277 TTGAAGAC-CATTGAAGA
          1 TTGAAGACAAATTGAAGA

        294 ATTATTTCCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    8  0.50
  19    8  0.50

ACGTcount: A:0.44, C:0.08, G:0.22, T:0.25


Consensus pattern (19 bp):   
TTGAAGACAAATTGAAGAT
Done.