Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007060.1 Corchorus olitorius cultivar O-4 contig07085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:551 original size:9 final size:9

Alignment explanation


    Indices: 531--563  Score: 57
    Period size: 9  Copynumber: 3.6  Consensus size: 9

        521 ATACTTTTTG

                      
        531 CTGAATTATA
          1 CTGAA-TATA

                     
        541 CTGAATATA
          1 CTGAATATA

                     
        550 CTGAATATA
          1 CTGAATATA

                 
        559 CTGAA
          1 CTGAA

        564 AGAACTCTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   9   18  0.78
  10    5  0.22

ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33


Consensus pattern (9 bp):   
CTGAATATA
Done.