Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007066.1 Corchorus olitorius cultivar O-4 contig07091, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2411
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24


Found at i:2100 original size:26 final size:24

Alignment explanation


    Indices: 2064--2117  Score: 72
    Period size: 26  Copynumber: 2.2  Consensus size: 24

       2054 TCATGCACCC

                        *          *  
       2064 AAAACAATTTATTTAAAACCATTTAT
          1 AAAACAATTTA-ATAAAA-CATTAAT

                                    
       2090 AAAACAATTTAATAAAACATTAAT
          1 AAAACAATTTAATAAAACATTAAT

                
       2114 AAAA
          1 AAAA

       2118 TAGTTCCTCA


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  24   10  0.38
  25    5  0.19
  26   11  0.42

ACGTcount: A:0.59, C:0.09, G:0.00, T:0.31


Consensus pattern (24 bp):   
AAAACAATTTAATAAAACATTAAT
Done.