Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000707.1 Corchorus olitorius cultivar O-4 contig00707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31


Found at i:1131 original size:44 final size:46

Alignment explanation


    Indices: 1021--1143  Score: 178
    Period size: 44  Copynumber: 2.7  Consensus size: 46

       1011 TATTGTGCCA

                   *           *           *               
       1021 AACCTTGGTAGGAAACTATTACTCCATAGACAACTCCATTATAAAAT
          1 AACCTTGATAGGAAACTATAACTCCATAG-CCACTCCATTATAAAAT

               *                                          
       1068 AACATTGATAGGAAACTATAACTCCATAGCCA-TCCATTAT-AAAT
          1 AACCTTGATAGGAAACTATAACTCCATAGCCACTCCATTATAAAAT

                          *                 
       1112 AACCTTGATAGGAATCTATAACTCCATAGCCA
          1 AACCTTGATAGGAAACTATAACTCCATAGCCA

       1144 ACTAATAATC


Statistics
Matches: 70,  Mismatches: 6, Indels: 3
        0.89            0.08        0.04

Matches are distributed among these distances:
  44   34  0.49
  45    8  0.11
  46    2  0.03
  47   26  0.37

ACGTcount: A:0.41, C:0.22, G:0.11, T:0.27


Consensus pattern (46 bp):   
AACCTTGATAGGAAACTATAACTCCATAGCCACTCCATTATAAAAT
Done.