Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000708.1 Corchorus olitorius cultivar O-4 contig00708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1477
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:1229 original size:9 final size:9

Alignment explanation


    Indices: 1215--1241  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

       1205 AAACAGTTGC

                     
       1215 TTTGTTTTG
          1 TTTGTTTTG

                     
       1224 TTTGTTTTG
          1 TTTGTTTTG

                     
       1233 TTTGTTTTG
          1 TTTGTTTTG

       1242 ATGTTTATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78


Consensus pattern (9 bp):   
TTTGTTTTG
Done.