Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007081.1 Corchorus olitorius cultivar O-4 contig07106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3343
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31


Found at i:2987 original size:26 final size:27

Alignment explanation


    Indices: 2931--2988  Score: 66
    Period size: 26  Copynumber: 2.2  Consensus size: 27

       2921 TCCAAATTTC

                      *       *        
       2931 CTTTTTATTTCCTTATTTCTCCTTATT
          1 CTTTTTATTTACTTATTTATCCTTATT

                       *        *      
       2958 -TTTTTATTTATTTATTTATTCTT-TT
          1 CTTTTTATTTACTTATTTATCCTTATT

                  
       2983 CTTTTT
          1 CTTTTT

       2989 TCCTTTTCCT


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  25    2  0.08
  26   24  0.92

ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74


Consensus pattern (27 bp):   
CTTTTTATTTACTTATTTATCCTTATT
Done.