Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007082.1 Corchorus olitorius cultivar O-4 contig07107, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30


Found at i:440 original size:15 final size:15

Alignment explanation


    Indices: 420--451  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        410 AAACTAAGTG

                           
        420 GAGCTTGTCGATTTT
          1 GAGCTTGTCGATTTT

                    *      
        435 GAGCTTGTTGATTTT
          1 GAGCTTGTCGATTTT

              
        450 GA
          1 GA

        452 ACCCCCAAGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.16, C:0.09, G:0.28, T:0.47


Consensus pattern (15 bp):   
GAGCTTGTCGATTTT
Done.