Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007085.1 Corchorus olitorius cultivar O-4 contig07110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 752

Length: 1254
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:583 original size:22 final size:22

Alignment explanation


    Indices: 558--605  Score: 96
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        548 CAATAACTTG

                                  
        558 TTAACATCTAAAGTTACCAGGT
          1 TTAACATCTAAAGTTACCAGGT

                                  
        580 TTAACATCTAAAGTTACCAGGT
          1 TTAACATCTAAAGTTACCAGGT

                
        602 TTAA
          1 TTAA

        606 TGCAAACTTG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33


Consensus pattern (22 bp):   
TTAACATCTAAAGTTACCAGGT
Done.