Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007099.1 Corchorus olitorius cultivar O-4 contig07124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25


Found at i:741 original size:46 final size:46

Alignment explanation


    Indices: 689--787  Score: 198
    Period size: 46  Copynumber: 2.2  Consensus size: 46

        679 CGCAAGGAGA

                                                          
        689 TGCTGCCGATGCCGCTGCGTGATGGCAGGCGAGCAAGGCAGCTTGC
          1 TGCTGCCGATGCCGCTGCGTGATGGCAGGCGAGCAAGGCAGCTTGC

                                                          
        735 TGCTGCCGATGCCGCTGCGTGATGGCAGGCGAGCAAGGCAGCTTGC
          1 TGCTGCCGATGCCGCTGCGTGATGGCAGGCGAGCAAGGCAGCTTGC

                   
        781 TGCTGCC
          1 TGCTGCC

        788 TAAGCACGCC


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   53  1.00

ACGTcount: A:0.14, C:0.29, G:0.38, T:0.18


Consensus pattern (46 bp):   
TGCTGCCGATGCCGCTGCGTGATGGCAGGCGAGCAAGGCAGCTTGC
Done.