Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000071.1 Corchorus olitorius cultivar O-4 contig00071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 650

Length: 1084
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:449 original size:10 final size:10

Alignment explanation


    Indices: 434--463  Score: 60
    Period size: 10  Copynumber: 3.0  Consensus size: 10

        424 GTTGTCCACG

                      
        434 GTTTATTTTT
          1 GTTTATTTTT

                      
        444 GTTTATTTTT
          1 GTTTATTTTT

                      
        454 GTTTATTTTT
          1 GTTTATTTTT

        464 TCTATCATTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   20  1.00

ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80


Consensus pattern (10 bp):   
GTTTATTTTT
Done.